Index _ | A | B | C | D | E | G | J | K | M | P | R | S | U | W _ __init__() (palmiche.utils.mdp.MDP method) (palmiche.utils.tools.CHECK method) (palmiche.utils.tools.Mol2 method) A AddConformer() (palmiche.utils.tools.Mol2 method) angle_between() (in module palmiche.utils.tools) annealing1() (palmiche.utils.mdp.MDP method) annealing2() (palmiche.utils.mdp.MDP method) annealing3() (palmiche.utils.mdp.MDP method) aovec() (in module palmiche.utils.tools) B backoff() (in module palmiche.utils.tools) C ChangeName() (palmiche.utils.tools.Mol2 method) CHECK (class in palmiche.utils.tools) checkrun() (in module palmiche.utils.tools) cp() (in module palmiche.utils.tools) CTE (class in palmiche.utils.tools) D daysdiff() (palmiche.utils.tools.CHECK method) E estimated_end_datetime() (palmiche.utils.tools.CHECK method) G get_atom_index() (in module palmiche.utils.tools) get_palmiche_data() (in module palmiche.utils.tools) get_top_sections() (in module palmiche.utils.tools) get_vec_COM() (in module palmiche.utils.tools) gmxtrjconv() (in module palmiche.utils.gmxtrjconv) J job_launch() (in module palmiche.utils.tools) job_launch_list() (in module palmiche.utils.tools) K KbT() (in module palmiche.utils.tools) M main() (in module palmiche.utils.gmxtrjconv) MDP (class in palmiche.utils.mdp) module palmiche.docking palmiche.utils.gmxtrjconv palmiche.utils.mdp palmiche.utils.tools Mol2 (class in palmiche.utils.tools) multi_run() (in module palmiche.utils.tools) my_guess_types() (in module palmiche.utils.tools) P palmiche.docking module palmiche.utils.gmxtrjconv module palmiche.utils.mdp module palmiche.utils.tools module pull() (palmiche.utils.mdp.MDP method) R read() (palmiche.utils.tools.Mol2 method) replace_conformer() (in module palmiche.utils.tools) rm() (in module palmiche.utils.tools) RSS() (in module palmiche.utils.tools) RUS() (in module palmiche.utils.tools) S sign_change_index() (in module palmiche.utils.tools) U unit_vector() (in module palmiche.utils.tools) W write() (palmiche.utils.tools.Mol2 method)